[an error occurred while processing this directive] [an error occurred while processing this directive] [an error occurred while processing this directive]
[an error occurred while processing this directive]
研究论文

辽宁省9种兰科植物根内与根际土壤中真菌群落结构的差异

展开
  • 1 沈阳农业大学生物科学技术学院, 沈阳 110161
    2 辽宁省全球变化与生物入侵重点实验室, 沈阳 110161

收稿日期: 2019-03-12

  录用日期: 2019-11-18

  网络出版日期: 2020-01-03

基金资助

辽宁省自然科学基金(201602656)

Difference in fungal communities between in roots and in root-associated soil of nine orchids in Liaoning, China

Expand
  • 1 College of Biological Technology, Shenyang Agricultural University, Shenyang 110161, China
    2 Key Laboratory of Biological Invasions and Global Changes, Shenyang 110161, China

Received date: 2019-03-12

  Accepted date: 2019-11-18

  Online published: 2020-01-03

Supported by

Supported by the Natural Science Foundation of Liaoning Province(201602656)

摘要

兰科植物的生存及生长高度依赖其根中的共生真菌, 其中的菌根真菌更是对兰科植物的种子萌发与后续生长有着非常重要的作用, 研究兰科植物根中的真菌, 尤其是菌根真菌, 对兰科植物的保护有重要作用。该研究利用第二代测序技术, 对中国辽宁省境内的9种属于极小种群的兰科植物的根、根际土和根围土中的真菌群落和菌根真菌组成进行了研究。结果显示, 兰科植物根中的真菌群落和根际土、根围土中的真菌群落具有显著差异。兰科植物根中的总操作分类单元(OTU)数目远小于根际土和根围土中的总OTU数目。同时, 兰科植物根中菌根真菌的种类和丰度与根际土、根围土中菌根真菌的种类与丰度没有明显联系。FunGuild分析结果显示, 丛枝菌根真菌在根际土与根围土中的丰度非常高, 但在兰科植物的根中却数量极少。这些结果表明, 兰科植物根中的真菌群落与土壤中的真菌群落在一定程度上是相互独立的。

本文引用格式

蒋玉玲, 陈旭辉, 苗青, 曲波 . 辽宁省9种兰科植物根内与根际土壤中真菌群落结构的差异[J]. 植物生态学报, 2019 , 43(12) : 1079 -1090 . DOI: 10.17521/cjpe.2019.0055

Abstract

Aims Orchid plants generally grow better when they are mycorrhizal since mycorrhizal fungi are likely to assist in orchid seeds’ germination. However, there is little quantitative work on it. Thus we hope to better understand this mechanism to benefit the orchid plants protection.
Methods We studied nine small population species of orchids grown in Liaoning Province, China. We analyzed the composition of orchid mycorrhizal fungi (OMF) and fungal communities in the roots, in the rhizosphere soil as well as bulk soil, by taking advantage of the next generation sequencing technology.
Important findings Our study showed that there was a significant difference in fungal communities among in the roots, the rhizosphere soil and the bulk soil, especially in the total operational taxonomic unit (OTU) number. Although the OTU number was far smaller in the roots than in the rhizosphere soil and bulk soil, the species and abundances of OMF were less relative to each other. FunGuild, an indicator to predict the functional fungi, indicated that Arbuscular Mycorrhizal fungi were abundence in the rhizosphere while were rare in the roots of orchids. In general, the fungal communities in the roots were not tightly correlated with that in the root-associated soil.

[an error occurred while processing this directive]

参考文献

[1] Batty AL, Dixon KW, Brundrett M, Sivasithamparam K ( 2001). Constraints to symbiotic germination of terrestrial orchid seed in a mediterranean bushland. New Phytologist, 152, 511-520.
[2] Bidartondo MI, Read DJ ( 2008). Fungal specificity bottlenecks during orchid germination and development. Molecular Ecology, 17, 3707-3716.
[3] Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG ( 2013). Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature Methods, 10, 57-59.
[4] Bougoure J, Ludwig M, Brundrett M, Grierson P ( 2009). Identity and specificity of the fungi forming mycorrhizas with the rare mycoheterotrophic orchid Rhizanthella gardneri. Mycological Research, 113, 1097-1106.
[5] Cao W, Wu YY, Li Y, Cong XX ( 2013). Priority conservation regions of threatened plants in Northeast China. Chinese Journal of Applied Ecology, 24, 326-330.
[5] [ 曹伟, 吴雨洋, 李岩, 丛欣欣 ( 2013). 中国东北受威胁植物的优先保护区域. 应用生态学报, 24, 326-330.]
[6] Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pe?a AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R ( 2010). QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 7, 335-336.
[7] Cevallos S, Sánchez-Rodríguez A, Decock C, Declerck S, Suárez JP ( 2017). Are there keystone mycorrhizal fungi associated to tropical epiphytic orchids? Mycorrhiza, 27, 225-232.
[8] Chao A ( 1984). NonparaMetric estimation of the number of classes in a population. Scandinavian Journal of Statistics, 11, 265-270.
[9] Chao A, Yang MCK ( 1993). Stopping rules and estimation for recapture debugging with unequal failure rates. Biometrika, 80, 193-201.
[10] Dearnaley JDW, Martos F, Selosse MA (2012). Orchid mycorrhizas: Molecular ecology, physiology, evolution and conservation aspects. In: Hock B ed. Fungal Associations, The Mycota IX. 2nd edn. Springer-Verlag, Berlin. 207-230.
[11] Diez JM ( 2007). Hierarchical patterns of symbiotic orchid germination linked to adult proximity and environmental gradients. Journal of Ecology, 95, 159-170.
[12] Edgar RC ( 2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460-2461.
[13] Egidi E, May TW, Franks AE ( 2018). Seeking the needle in the haystack: Undetectability of mycorrhizal fungi outside of the plant rhizosphere associated with an endangered Australian orchid. Fungal Ecology, 33, 13-23.
[14] Ercole E, Adamo M, Rodda M, Gebauer G, Girlanda M, Perotto S ( 2015). Temporal variation in mycorrhizal diversity and carbon and nitrogen stable isotope abundance in the wintergreen meadow orchid Anacamptis morio. New Phytologist, 205, 1308-1319.
[15] Esposito F, Jacquemyn H, Waud M, Tyteca D ( 2016). Mycorrhizal fungal diversity and community composition in two closely related Platanthera (Orchidaceae) species. PLOS ONE, 11, e0164108. DOI: 10.1371/journal.pone.0164108.
[16] Ezzi MI, Lynch JM ( 2002). Cyanide catabolizing enzymes in Trichoderma spp. Enzyme and Microbial Technology, 31, 1042-1047.
[17] Gremion F, Chatzinotas A, Harms H ( 2003). Comparative 16S rDNA and 16S rRNA sequence analysis indicates that Actinobacteria might be a dominant part of the metabolically active bacteria in heavy metal-contaminated bulk and rhizosphere soil. Environmental Microbiology, 5, 896-907.
[18] Han JY, Xiao HF, Gao JY ( 2016). Seasonal dynamics of mycorrhizal fungi in Paphiopedilum spicerianum (Rchb. f) Pfitzer—A critically endangered orchid from China. Global Ecology & Conservation, 6, 327-338.
[19] Jacquemyn H, Brys R, Vandepitte K, Honnay O, Roldán-Ruiz I, Wiegand T ( 2007). A spatially explicit analysis of seedling recruitment in the terrestrial orchid Orchis purpurea. New Phytologist, 176, 448-459.
[20] Jacquemyn H, Waud M, Lievens B, Brys R ( 2016). Differences in mycorrhizal communities between Epipactis palustris, E. helleborine and its presumed sister species E. neerlandica. Annals of Botany, 118, 105-114.
[21] Jiang YL ( 2018). Mycorrhizal Fungi Diversity of Nine Orchids in Liaoning Province. Master degree dissertation, Shenyang Agricuttural University, Shenyang.
[21] [ 蒋玉玲 ( 2018). 辽宁省内九种兰科植物菌根真菌多样性研究. 硕士学位论文, 沈阳农业大学, 沈阳.]
[22] Kartzinel TR, Trapnell DW, Shefferson RP ( 2013). Highly diverse and spatially heterogeneous mycorrhizal symbiosis in a rare epiphyte is unrelated to broad biogeographic or environmental features. Molecular Ecology, 22, 949-5961.?
[23] K?ljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AFS, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM, Douglas B, Drenkhan T, Eberhardt U, Due?as M, Grebenc T, Griffith GW, Hartmann M, Kirk PM, Kohout P, Larsson E, Lindahl BD, Lücking R, Martín MP, Matheny PB, Nguyen NH, Niskanen T, Oja J, Peay KG, Peintner U, Peterson M, P?ldmaa K, Saag L, Saar I, Schü?ler A, Scott JA, Senés C, Smith ME, Suija A, Taylor DL, Telleria MT, Wei? M, Larsson KH ( 2013). Towards a unified paradigm for ?sequence-based identification of fungi. Molecular Ecology, 22, 5271-5277.
[24] Liu T, Li CM, Han YL, Chiang TY, Chiang YC, Sung HM ( 2015). Highly diversified fungi are associated with the achlorophyllous orchid Gastrodia flavilabella. BMC Genomics, 16, 1422-1435.
[25] Lozupone CA, Hamady M, Kelley ST, Knight R ( 2007). Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Applied and Environmental Microbiology, 73, 1576-1585.
[26] Lozupone CA, Knight R ( 2005). Unifrac: A new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology, 71, 8228-8235.
[27] Ma XY, Kang JC, Nontachaiyapoom S, Wen TC, Hyde KD ( 2015). Non-mycorrhizal endophytic fungi from orchids. Current Science, 109, 72-87.
[28] McCormick MK, Lee Taylor D, Juhaszova K, Burnett Jr RK, Whigham DF, O’Neill JP ( 2012). Limitations on orchid recruitment: Not a simple picture. Molecular Ecology, 21, 1511-1523.
[29] McCormick MK, Taylor DL, Whigham DF, Burnett Jr RK ( 2016). Germination patterns in three terrestrial orchids relate to abundance of mycorrhizal fungi. Journal of Ecology, 104, 744-754.
[30] McKendrick SL, Leake JR, Taylor DL, Read DJ ( 2000). Symbiotic germination and development of myco-heterotrophic plants in nature: Ontogeny of Corallorhiza trifida and characterization of its mycorrhizal fungi. New Phytologist, 145, 523-537.
[31] Novotná A, Benítez á, Herrera P, Cruz D, Filipczyková E, Suárez JP ( 2018). High diversity of root-associated fungi isolated from three epiphytic orchids in southern Ecuador. Mycoscience, 59, 24-32.
[32] Oja J, Kohout P, Tedersoo L, Kull T, K?ljalg U ( 2015). Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing. New Phytologist, 205, 1608-1618.
[33] Ran YZ, Xu JT ( 1988). Studies on the inhibition of seed germination of Gastrodia elata Bl. by Armillaria mellea Qul. Traditional Chinese Medicine Journal, 13(10), 15-17.
[33] [ 冉砚珠, 徐锦堂 ( 1988). 蜜环菌抑制天麻种子发芽的研究. 中药通报, 13(10), 15-17.]
[34] Shakya M, Gottel N, Castro H, Yang ZK, Gunter L, Labbé J, Muchero W, Bonito G, Vilgalys R, Tuskan G, Podar M, Schadt CW ( 2013). A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. PLOS ONE, 8, e76382. DOI: 10.1371/journal.pone.0076382.
[35] Smith SE, Read DJ (2008). Mycorrhizal Symbiosis. Academic Press, Cambridge, UK.
[36] Sun FH, Yuan J, Lu S ( 2006). The change and test of climate in northeast China over the last 100 Years. Climatic and Environmental Research, 11, 101-108.
[36] [ 孙凤华, 袁健, 路爽 ( 2006). 东北地区近百年气候变化及突变检测. 气候与环境研究, 11, 101-108.]
[37] Vincenot L, Tedersoo L, Richard F, Horcine H, K?ljalg U, Selosse MA ( 2008). Fungal associates of Pyrola rotundifolia, a mixotrophic Ericaceae, from two Estonian boreal forests. Mycorrhiza, 19, 15-25.
[38] Voyron S, Ercole E, Ghignone S, Perotto S, Girlanda M ( 2017). Fine-scale spatial distribution of orchid mycorrhizal fungi in the soil of host-rich grasslands. New Phytologist, 213, 1428-1439.
[39] Vujanovic V, St-Arnaud M, Barabé D, Thibeault G ( 2000). Viability testing of orchid seed and the promotion of colouration and germination. Annals of Botany, 86, 79-86.
[40] Wang SQ, Zhou CH, Liu JY, Li KR, Yang XM ( 2001). Simulation analyses of terrestrial carbon cycle balance model in Northeast China. Acta Geographica Sinica, 56, 390-400.
[40] [ 王绍强, 周成虎, 刘纪远, 李克让, 杨晓梅 ( 2001). 东北地区陆地碳循环平衡模拟分析. 地理学报, 56, 390-400.]
[41] Wang ZH, Li PJ, Wang YS, Hu T, Gong ZQ, Sun TH, Wan ZC, Chen DG ( 2005). Ecological function zoning in Liaoning Province. Chinese Journal of Ecology, 24, 1339-1342.
[41] [ 王治江, 李培军, 王延松, 胡涛, 巩宗强, 孙铁珩, 万忠成, 陈大光 ( 2005). 辽宁省生态功能分区研究. 生态学杂志, 24, 1339-1342.]
[42] Waud M, Brys R, van Landuyt W, Lievens B, Jacquemyn H ( 2017). Mycorrhizal specificity does not limit the distribution of an endangered orchid species. Molecular Ecology, 26, 1687-1701.
[43] Waud M, Busschaert P, Lievens B, Jacquemyn H ( 2016). Specificity and localised distribution of mycorrhizal fungi in the soil may contribute to co-existence of orchid species. Fungal Ecology, 20, 155-165.
[44] Xu JT ( 2013). Review of the 50-year research of the cultivation of Gastrodia elate Bl. in China. Edible and Medicinal Mushrooms, 21, 58-63.
[44] [ 徐锦堂 ( 2013). 我国天麻栽培50年研究历史的回顾. 食药用菌, 21, 58-63.]
[45] Zimmer K, Meyer C, Gebauer G ( 2008). The ectomycorrhizal specialist orchid Corallorhiza trifida is a partial myco- heterotroph. New Phytologist, 178, 395-400.
文章导航

/

[an error occurred while processing this directive]