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Chinese Journal of Plant Ecology >
Predicting potential geographical distributions and patterns of the relic plant Gymnocarpos przewalskii using Maximum Entropy and Genetic Algorithm for Rule-set Prediction
Received date: 2010-05-19
Accepted date: 2010-07-25
Online published: 2010-10-31
Aims Understanding the geographical distribution and patterns of endemic species is critical to biodiversity conservation and biogeographical history reconstruction of the area occupied by the species. The ecological niche models (ENMs) are useful techniques to explore the links between the species distribution and the environmental data. The displayed potential habitats for the species, in turn can enable the examination of the predictive abilities of various ENMs. We attempt to determine the potential geographic distributions of the Tertiary relic plant Gymnocarpos przewalskii based on the model of maximum entropy (MAXENT) and genetic algorithm for rule-set prediction (GARP).
Methods Based on sixteen sampled localities and seven environmental layers (isothermality, maximum temperature, minimum temperature, annual precipitation, potential evapotranspiration ratio (PER), altitude and soil types), we conducted predictions of G. przewalskii using MAXENT and GARP models. The spatial distribution maps of G. przewalskii with the different environmental suitable values (MAXENT) or overlap index (GARP) displayed the distribution patterns clearly.
Important findings The potential distributions of G. przewalskii with the highest environment suitability are predicted at first in the middle of Hexi corridor and the western Yumen of Gansu Province, the north of Ningxia-Hui Autonomous Region, and the part of the Wulate banner of Inner Mongolia in China. The others are mainly in northwestern Tarim Basin and small isolated areas in northwestern Qaidam Basin. Both MAXENT and GARP produced good predictions for G. przewalskii. However, GARP predicted larger and more continuous suitable habitats around the species’ locations and some isolated and fragmented spatial predictions where the species has never been found or collected before. MAXENT predicted a distribution that is a logical proportion of the study area and removed most of the unlikely isolated habitats.
MA Song-Mei, ZHANG Ming-Li, ZHANG Hong-Xiang, MENG Hong-Hu, CHEN Xi . Predicting potential geographical distributions and patterns of the relic plant Gymnocarpos przewalskii using Maximum Entropy and Genetic Algorithm for Rule-set Prediction[J]. Chinese Journal of Plant Ecology, 2010 , 34(11) : 1327 -1335 . DOI: 10.3773/j.issn.1005-264x.2010.11.010
| [1] | Anderson RP, Gomez-Laverde M, Peterson AT (2002a). Geographical distributions of spiny pocket mice in South America: insights from predictive models. Global Ecology and Biogeography, 11, 131-141. |
| [2] | Anderson RP, Lew D, Peterson AT (2003). Evaluating predictive models of species’ distributions: criteria for selecting optimal models. Ecological Modeling, 162, 211-232. |
| [3] | Anderson RP, Peterson AT, Gomez-Laverde M (2002b). Using niche-based GIS modeling to test geographic predictions of competitive exclusion and competitive release in South American pocket mice. Oikos, 98, 3-16. |
| [4] | Bittrich V (1993. Caryophyllaceae. In: Kubitzki K ed. The Families and Genera of Vascular Plants. Springer-Verlag, Berlin. |
| [5] | Caldecott JO, Jenkins MD, Johnson TH, Groombridge B (1996). Priorities for conserving global species richness and endemism. Biodiversity and Conservation, 5, 699-727. |
| [6] | da Fonseca GAB (2000). It’s time to work together and stop duplicating conservation efforts: following Africa’s lead in setting priorities. Nature, 405, 393-394. |
| [7] | Dang RL (党荣理), Jiang YC (姜彦成 ) (1996). The study of pollen morphology of Paronychioideae in Xinjiang. Acta Botanica Boreali-Occidentalia Sinica (西北植物学报), 16, 61-64. (in Chinese with English abstract) |
| [8] | Dang RL (党荣理), Pan XL (潘晓玲), Gu XF (顾雪峰 ) (2002). Floristic analysis of spermatophyte genera in the arid deserts area in North-West China. Guihaia (广西植物), 22, 121-128. (in Chinese with English abstract) |
| [9] | Fielding AH, Bell JF (1997). A review of methods for the assessment of prediction errors in conservation presence/ absence models. Environmental Conservation, 24, 38-49. |
| [10] | Fu LG (傅立国 ) (1992). China Plant Red Data Book (中国植物红皮书). Science Press, Beijing. (in Chinese) |
| [11] | Graham CH, Ferrier S, Huettman F, Moritz C, Peterson AT (2004). New developments in museum-based informatics and applications in biodiversity analysis. Trends in Ecology & Evolution, 19, 497-503. |
| [12] | Guisan A, Harrell FE (2000). Ordinal response regression models in ecology. Journal of Vegetation Science, 11, 617-626. |
| [13] | Guisan A, Thuiller W (2005). Predicting species distribution: offering more than simple habitat models. Ecology Letters, 8, 993-1009. |
| [14] | Hernandez PA, Franke I, Herzog SK, Pacheco V, Paniagua L, Quintana HL, Soto A, Swenson JJ, Tovar C, Valqui TH, Vargas J, Young BE (2008). Predicting species distributions in poorly-studied landscapes. Biodiversity and Conservation, 17, 1353-1366. |
| [15] | Hernandez PA, Graham CH, Master LL, Albert DL (2006). The effet of sample size and species characteristics on performance of different species distribution modeling methods. Ecography, 29, 773-785. |
| [16] | Holdridge LR, Grenke WC, Hatheway WH, Liang T, Tosi JA Jr (1971). Forest Environments in Tropical Life Zones: a Pilot Study. Pergamon Press, New York. |
| [17] | IGBP-DIS (International Geosphere-Biosphere Programme, Data and Information System) (2000). Global Soil Data Task. http://sage.wisc.edu/atlas/. Cited 3 Jun. 2000. |
| [18] | Jiang X (蒋霞), Ni J (倪健 ) (2005). Species-climate relationships of 10 desert plant species and their estimated potential distribution range in the arid lands of northwestern China. Acta Phytoecologica Sinica (植物生态学报), 29, 98-107. (in Chinese with English abstract) |
| [19] | Linder HP (1995). Setting conservation priorities: the importance of endemism and phylogeny in the southern African orchid genus Herschelia. Conservation Biology, 9, 585-595. |
| [20] | Liu SL (刘生龙), Guo ZZ (郭志中), Wang LD (王理德), Gao ZH (高志海 ) (1995). Experiment on introduction and cultivation of Gymnocarpos przewalskii. Journal of Desert Research (中国沙漠), ( 15), 88-91. (in Chinese with English abstract) |
| [21] | Liu YS (刘永生), Xu HS (徐怀寿), Sun JZ (孙继周 ) (2008). The investigation and research on the II protected plants Gymnocarpos przewalskii of China. Ningxia Journal of Agriculture and Forestry Science and Technology (宁夏农林科技), (1), 16, 26. (in Chinese) |
| [22] | Margules C, Sarkar S (2000). Systematic conservation planning. Nature, 405, 243-253. |
| [23] | Ottaviani D, Lasinio GJ, Boitani L (2004). Two statistical methods to validate habitat suitability models using presence-only data. Ecological Modeling, 179, 417-443. |
| [24] | Oxelman B, Ahlgren B, Thulin M (2002). Circumscription and phylogenetic relationships of Gymnocarpos(Caryophyllaceae-Paronychioideae). Edinburgh Journal of Botany, 59, 221-237. |
| [25] | Pan XL (潘晓玲 ) (2001). Plant Flora Geography and Resources Utilization of the Northwest Arid and Desert Area (西北干旱荒漠区植物区系地理与资源利用). Science Press, Beijing. (in Chinese) |
| [26] | Pearson RG, Dawson TP, Liu C (2004). Modelling species distributions in Britain: a hierarchical integration of climate and land-cover data. Ecography, 27, 285-298. |
| [27] | Pearson RG, Raxworthy CJ, Nakamura M, Peterson AT (2007). Predicting species distributions from small numbers of occurrence records: a test case using cryptic geckos in Madagascar. Journal of Biogeography, 34, 102-117. |
| [28] | Peterson AT, Papes M, Eaton M (2007). Transferability and model evaluation in ecological niche modeling: a comparison of GARP and Maxent. Ecography, 30, 550-560. |
| [29] | Peterson AT, Watson DM (1998). Problems with areal definitions of endemism: the effects of spatial scaling. Diversity and Distributions, 4, 189-194. |
| [30] | Petrusson L, Thulin M (1996). Taxonomy and biogeography of Gymnocarpos(Caryophyllaceae). Edinburgh Journal of Botany, 53, 1-26. |
| [31] | Phillips SJ, Anderson RP, Schapire RE (2006). Maximum entropy modeling of species geographic distributions. Ecological Modeling, 190, 231-259. |
| [32] | Phillips SJ, Dudik M (2008). Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation. Ecography, 31, 161-175. |
| [33] | Stockwell D, Peters D (1999). The GARP modeling system: problems and solutions to automated spatial prediction. International Journal of Geographical Information Science, 13, 143-158. |
| [34] | Stockwell DRB, Peterson AT (2002). Effects of sample size on accuracy of species distribution models. Ecological Modeling, 148, 1-13. |
| [35] | Tsoar A, Allouche O, Steinitz O, Rotem D, Kadmon R (2007). A comparative evaluation of presence-only methods for modelling species distribution. Diversity and Distributions, 13, 397-405. |
| [36] | Wang ZB (汪之波), Gao QY (高清洋), Sun JZ (孙继周 ) (2004). Tissue culture and plant regeneration of rare plant Gymnocarpos przewalskii. Acta Botanica Boreali- Occidentalia Sinica (西北植物学报), 7, 1319-1321. (in Chinese with English abstract) |
| [37] | Wang ZB (汪之波), Gao QY (高清洋), Sun JZ (孙继周), Ma QL (马全林 ) (2009). Study on biological characteristics of rare endangered plant Gymnocarpos przewalskii. Resource Development & Market (资源开发与市场), ( 25), 481-509. (in Chinese with English abstract) |
| [38] | Ward DF (2007). Modelling the potential geographic distribution of invasive ant species in New Zealand. Biological Invasions, 9, 723-735. |
| [39] | Yin LK (尹林克), Tan LX (谭丽霞), Wang B (王兵 ) (2006). Rare Endangered Endemic High Plants in Xinjiang of China (新疆珍稀濒危特有高等植物). Xinjiang Science and Technique Press, ürümqi. (in Chinese) |
| [40] | Zheng D (郑度), Yao TD (姚檀栋 ) (2006). Uplifting of Tibetan Plateau with its environmental effects. Advance in Earth Science (地球科学进展), 21, 451-458. (in Chinese with English abstract) |
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