Review of current progress in the metabolomics for plant response to abiotic stress

doi:10.3724/SP.J.1258.2011.00110

Abstract

Abstract:

Metabolomics is an important platform for studying stress in plants. We can qualify and quantify the metabolites of plants with environment stress using modern analytical techniques. The metabolomics data can be further studied by correlating with transcriptomics and genomics data. The combination of ‘omics’ platforms is an essential tool for systems analyses of plants to determine the mechanics of plant response to environment stress. We review recent studies of plant response to abiotic stress using metabolomics method and combination of different ‘omics’ platforms.

Key words: abiotic stress, environmental stress, metabolites, metabolomics, plant

TENG Zhong-Qiu, FU Hui-Qing, JIA Shao-Hua, MENG Wei-Wei, DAI Rong-Ji, DENG Yu-Lin. Review of current progress in the metabolomics for plant response to abiotic stress[J]. Chin J Plant Ecol, 2011, 35(1): 110-118.

Add to citation manager EndNote|Ris|BibTeX

URL: https://www.plant-ecology.com/EN/10.3724/SP.J.1258.2011.00110

https://www.plant-ecology.com/EN/Y2011/V35/I1/110

References 46

[1]	Bailey NJ, Oven M, Holmes E, Nicholson JK, Zenk MH (2003). Metabolomic analysis of the consequences of cadmium exposure in Silene cucubalus cell cultures via ¹H NMR spectroscopy and chemometrics. Phytochemistry, 62, 851-858. DOI URL PMID
[2]	Boyer JS (1982). Plant productivity and environment. Science, 218, 443-448. URL PMID
[3]	Brindle JT, Antti H, Holmes E, Tranter G, Nicholson JK, Bethell HWL, Clarke S, Schofield PM, McKilligin E, Mosedale DE, Grainger DJ (2002). Rapid and noninvasive diagnosis of the presence and severity of coronary heart disease using¹H-NMR-based metabonomics . Nature Medicine, 8, 1439-1444. DOI URL PMID
[4]	Carmo-Silva AE, Keys AJ, Beale MH, Ward JL, Baker JM, Hawkins ND, Arrabaca MC, Parry MAJ (2009). Drought stress increases the production of 5-hydroxynorvaline in two C₄ grasses. Phytochemistry, 70, 664-671. URL PMID
[5]	Cook D, Fowler S, Fiehn O, Thomashow MF (2004). A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis Proceedings of the National Academy of Sciences of the United States of America, 101, 15243-15248.
[6]	Cramer GR, Ergul A, Grimplet J, Tillett RL, Tattersall EAR, Bohlman MC, Vincent D, Sonderegger J, Evans J, Osborne C, Quilici D, Schlauch KA, Schooley DA, Cushman JC (2007). Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles. Functional & Integrative Genomics, 7, 111-134. DOI URL PMID
[7]	Dai H, Xiao CN, Liu HB, Tang HR (2010). Combined NMR and LC-MS analysis reveals the metabonomic changes in Salvia miltiorrhiza Bunge induced by water depletion. Journal of Proteome Research, 9, 1460-1475. URL PMID
[8]	Dan M (淡墨), Gao XF (高先富), Xie GX (谢国祥), Liu Z (刘忠), Zhao AH (赵爱华), Jia W (贾伟) (2007). Application of metabolomics in research of plant metabolites. China Journal of Chinese Meteria Medica (中国中药杂志), 32, 2337-2341. (in Chinese with English abstract)
[9]	Deluc LG, Quilici DR, Decendit A, Grimplet J, Wheatley MD, Schlauch KA, Merillon JM, Cushman JC, Cramer GR (2009). Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay. BMC Genomics, 10, 212-244. URL PMID
[10]	Fiehn O (2003). Metabolic networks of Cucurbita maxima phloem . Phytochemistry, 62, 875-886. URL PMID
[11]	Foito A, Byrne SL, Shepherd T, Stewart D, Barth S (2009). Transcriptional and metabolic profiles of Lolium perenne L. genotypes in response to a PEG-induced water stress. Plant Biotechnology Journal, 7, 719-732. URL PMID
[12]	Fumagalli E, Baldoni E, Abbruscato P, Piffanelli P, Genga A, Lamanna R, Consonni R (2009). NMR techniques coupled with multivariate statistical analysis: tools to analyse Oryza sativa metabolic content under stress conditions. Journal of Agronomy and Crop Science, 195, 77-88.
[13]	Gong Q, Li P, Ma S, Indu Rupassara S, Bohnert HJ (2005). Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana. Plant Journal, 44, 826-839. URL PMID
[14]	Grimplet J, Wheatley MD, Jouira HB, Deluc LG, Cramer GR, Cushman JC (2009). Proteomic and selected metabolite analysis of grape berry tissues under well-watered and water-deficit stress conditions. Proteomics, 9, 2503-2528. DOI URL PMID
[15]	Guo B (郭宾), Dai RK (戴仁科) (2007). The process of metabolomics and its research strategy and analysis method. Chinese Journal of Health Laboratory Technology (中国卫生检验杂志), 17, 554-563. (in Chinese)
[16]	Hernandez G, Ramirez M, Valdes-Lopez O, Tesfaye M, Graham MA, Czechowski T, Schlereth A, Wandrey M, Erban A, Cheung F, Wu HC, Lara M, Town CD, Kopka J, Udvardi MK, Vance CP (2007). Phosphorus stress in common bean: root transcript and metabolic responses. Plant Physiology, 144, 752-767. URL PMID
[17]	Holmes E, Antti H (2002). Chemometric contributions to the evolution of metabonomics: mathematical solutions to characterising and interpreting complex biological NMR spectra. Analyst, 127, 1549-1557 URL PMID
[18]	Hou FY (侯夫云), Zhang LM (张立明), Wang QM (王庆美), Li AX (李爱贤), Zhang HY (张海燕), Dong SX (董顺旭) (2006). The molecular mechanism of plant tolerance under abiotic stress. Molecular Plant Breeding (分子植物育种), 26(6), 158-161. (in Chinese with English abstract).
[19]	Jahangir M, Abdel-Farid IB, Choi YH, Verpoorte R (2008). Metal ion-inducing metabolite accumulation in Brassica rapa. Journal of Plant Physiology, 165, 1429-1437. URL PMID
[20]	Johnson HE, Broadhurst D, Goodacre R, Smith AR (2003). Metabolic fingerprinting of salt-stressed tomatoes. Phytochemistry, 62, 919-928. URL PMID
[21]	Jozef K, Bořivoj K, Josef H, Martin B (2010). Effect of copper and salicylic acid on phenolic metabolites and free amino acids in Scenedesmus quadricauda (Chlorophyceae). Plant Science, 178, 307-311.
[22]	Kaplan F, Kopka J, Haskell DW, Zhao W, Schiller KC, Gatzke N, Sung DY, Guy CL (2004). Exploring the temperature stress metabolome of Arabidopsis. Plant Physiology, 136, 4159-4168. DOI URL PMID
[23]	Kaplan F, Kopka J, Sung DY, Zhao W, Popp M, Porat R, Guy CL (2007). Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content. Plant Journal, 50, 967-981. DOI URL PMID
[24]	Kieffer P, Planchon S, Oufir M, Ziebel J, Dommes J, Hoffmann L, Hausman JF, Renaut J (2009). Combining proteomics and metabolite analyses to unravel cadmium stress- response in poplar leaves. Journal of Proteome Research, 8, 400-417. DOI URL PMID
[25]	Kim JK, Bamba T, Harada K, Fukusaki E, Kobayashi A (2007). Time-course metabolic profiling in Arabidopsis thaliana cell cultures after salt stress treatment. Journal of Experimental Botany, 58, 415-424. DOI URL PMID
[26]	Maier W, Schmidt J, Wray V, Walter MH, Strack D (1999). The arbuscular mycorrhizal fungus, Glomus intraradices, induces the accumulation of cyclohexenone derivatives in tobacco roots. Planta, 207, 620-623. DOI URL
[27]	Mane SP, Robinet CV, Ulanov A, Schafleitner R, Tincopa L, Gaudin A, Nomberto G, Alvarado C, Solis C, Bolivar LA, Blas R, Ortega O, Solis J, Panta A, Rivera C, Samolski I, Carbajulca DH, Bonierbale M, Pati A, Heath LS, Bohnert HJ, Grene R (2009). Molecular and physiological adaptation to prolonged drought stress in the leaves of two Andean potato genotypes. Functional Plant Biology, 35, 669-688. URL PMID
[28]	Mittler R (2002). Oxidative stress, antioxidants and stress tolerance. Trends in Plant Science, 7, 405-410. DOI URL PMID
[29]	Mittler R, Vanderauwera S, Gollery M, van Breusegem F (2004). Reactive oxygen gene network of plants. Trends in Plant Science, 9, 490-498. DOI URL PMID
[30]	Morsy MR, Jouve L, Hausman JF, Hoffmann L, Stewart JM (2007). Alteration of oxidative and carbohydrate metabolism under abiotic stress in two rice ( Oryza sativa L.) genotypes contrasting in chilling tolerance. Plant Physiology, 164, 157-167.
[31]	Nicholson JK, Connelly J, Lindon JC, Holmes E (2002). Metabonomics: a platform for studying drug toxicity and gene function. Nature Reviews Drug Discovery, 1, 153-161. DOI URL PMID
[32]	Nicholson JK, Lindon JC, Holmes E (1999). Metabonomics: understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data. Xenobiotica, 29, 1181-1189. DOI URL PMID
[33]	Nikiforova VJ, Daub CO, Hesse H, Willmitzer L, Hoefgen R (2005a). Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response. Journal of Experimental Botany, 56, 1887-1896. DOI URL PMID
[34]	Nikiforova VJ, Kopka J, Tolstikov V, Fiehn O, Hopkins L, Hawkesford MJ, Hesse H, Hoefgen R (2005b). Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of Arabidopsis plants. Plant Physiology, 138, 304-318. DOI URL PMID
[35]	Shinozaki K, Sakakibara H (2009). Omics and bioinformatics: an essential toolbox for systems analyses of plant functions beyond 2010. Plant and Cell Physiology, 50, 1177-1180. DOI URL PMID
[36]	Shulaev V, Cortes D, Miller G, Mittler R (2008). Metabolomics for plant stress response. Physiologia Plantarum, 132, 199-208. DOI URL PMID
[37]	Sobhanian H, Motamed N, Jazii FR, Nakamura T, Komatsu S (2010). Salt stress induced differential proteome and metabolome response in the shoots of Aeluropus lagopoides (Poaceae), a halophyte C₄ plant. Journal of Proteome Research, 9, 2882-2897. DOI URL PMID
[38]	Tiessen A, Hendriks JHM, Stitt M, Branscheid A, Gibon Y, Farré EM, Geigenberger P (2002). Starch synthesis in potato tubers is regulated by post-translational redox modification of ADP-glucose pyrophosphorylase: a novel regulatory mechanism linking starch synthesis to the sucrose supply. Plant Cell, 14, 2191-2213. DOI URL PMID
[39]	Urano K, Maruyama K, Ogata Y, Morishita Y, Takeda M, Sakurai N, Suzuki H, Saito K, Shibata D, Kobayashi M, Yamaguchi-Shinozaki K, Shinozaki K (2009). Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant Journal, 57, 1065-1078. DOI URL PMID
[40]	Valliyodan B, Nguyen HT (2006). Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Current Opinion in Plant Biology, 9, 189-195. DOI URL PMID
[41]	Widodo JHP, Patterson JH, Newbigin E, Tester M, Bacic A, Roessner U (2009). Metabolic responses to salt stress of barley ( Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance. Journal of Experimental Botany, 60, 4089-4103. URL PMID
[42]	Xie ZM (谢宗铭), Dong YM (董永梅), Chen SY (陈受宜) (2008). Molecular and physiological mechanisms of higher plant abiotic stress adaptation. Journal of Anhui Agricultural Sciences (安徽农业科学), 36, 7996-7999. (in Chinese with English abstract).
[43]	Xu GW (许国旺) (2008). Metabolomics―Methods and Applications (代谢组学方法与应用) 1st edn. Science Press, Beijing. 1-4. (in Chinese)
[44]	Xu GW (许国旺), Lu X (路鑫), Yang SL (杨胜利) (2007). Recent advances in metabonomics. Acta Academiae Medicinae Sinicae (中国医学科学院学报), 29, 701-711. (in Chinese with English abstract)
[45]	Yin H (尹恒), Li SG (李曙光), Bai XF (白雪芳), Du YG (杜昱光) (2005). Research advances in plant metabolomics. Chinese Bulletin of Botany (植物学通报), 22, 532-540. (in Chinese with English abstract)
[46]	Zhang LJ (张立军), Liang ZS (梁宗锁) (2007). Plant Physiology (植物生理学) 1st edn. Science Press, Beijing. 378-405. (in Chinese)