Impacts and action pathways of domestication on diversity and community structure of crop microbiome: a review

doi:10.17521/cjpe.2021.0059

Abstract

Abstract:

Interactions between plants and coexisting microorganisms have significant impacts on plant growth, development, and health. Human domestication has resulted in significant differences between modern crops and their wild ancestors in physiological and genetic characteristics and growth environment, which will inevitably affect the interaction between crops and their microbiomes. Understanding the impact of domestication on the diversity and community structure of microbiome and the mechanisms involved is an important theoretical basis for application of microbiome during crop improvement and breeding. In this review, we summarize the research progress of the effects of domestication on the community composition and diversity of root and shoot microbiome (bacteria and fungi) in crops. We also analyze the involved action pathways in shaping crop microbiomes by domestication, considering the domestication effect on crop morphology, root configuration, exudates and other physiological characteristics, and the change in growth environment. The research directions that need to be focused on in this field were proposed.

Key words: domestication, microbiome, crop, diversity, community structure, bacteria, fungi

XIE Yu-Hang, JIA Pu, ZHENG Xiu-Tan, LI Jin-Tian, SHU Wen-Sheng, WANG Yu-Tao. Impacts and action pathways of domestication on diversity and community structure of crop microbiome: a review[J]. Chin J Plant Ecol, 2022, 46(3): 249-266.

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作物 Crop	部位 Tissue	细菌 Bacteria		真菌 Fungi		参考文献 Reference
作物 Crop	部位 Tissue	多样性 Diversity	群落结构 Community structure	多样性 Diversity	群落结构 Community structure	参考文献 Reference
玉米 Zea mays	根 Root	↓	S.	↓	S.	Sangabriel-Conde et al., 2015; Szoboszlay et al., 2015; Schmidt et al., 2020
玉米 Zea mays	种子 Seed	N.S.	S.	-	-	Johnston-Monje & Raizada, 2011
水稻 Oryza sativa	根 Root	↓	S.	?	S.	Shenton et al., 2016; Banik et al., 2017 Shi et al., 2018, 2019a
水稻 Oryza sativa	种子 Seed	-	S.	-	S.	Kim et al., 2020
小麦 Triticum aestivum	根 Root	↓	S.	↓	S.	Ofek-Lalzar et al., 2016; Hassani et al., 2020; Özkurt et al., 2020; Tkacz et al., 2020
	种子 Seed	N.S.	S.	N.S.	S.	Özkurt et al., 2020
	叶 Leaf	↓	S.	N.S.	S.	Hassani et al., 2020
大豆 Glycine max	根 Root	↓	S.	?	S.	Liu et al., 2019; Shi et al., 2019a; Chang et al., 2020; Tian et al., 2020a; Zheng et al., 2020
甜菜 Beta vulgaris	根 Root	↓	S.	-	-	Zachow et al., 2014
向日葵 Helianthus annuus	根 Root	N.S.	N.S.	N.S.	S.	Leff et al., 2017
小米 Setaria italica	根 Root	N.S.	S.	-	-	Chaluvadi & Bennetzen, 2018
菜豆 Phaseolus vulgaris	根 Root	↑	S.	-	-	Pérez-Jaramillo et al., 2018, 2019
Agave tequilana	根 Root	↓	S.	?	S.	Coleman-Derr et al., 2016
Agave tequilana	叶 Leaf	↓	S.	?	S.	Coleman-Derr et al., 2016
面包树 Artocarpus communis	根 Root	-	-	↓	S.	Xing et al., 2012

作物 Crop	部位 Tissue	细菌 Bacteria		真菌 Fungi		参考文献 Reference
作物 Crop	部位 Tissue	多样性 Diversity	群落结构 Community structure	多样性 Diversity	群落结构 Community structure	参考文献 Reference
玉米 Zea mays	根 Root	↓	S.	↓	S.	Sangabriel-Conde et al., 2015; Szoboszlay et al., 2015; Schmidt et al., 2020
玉米 Zea mays	种子 Seed	N.S.	S.	-	-	Johnston-Monje & Raizada, 2011
水稻 Oryza sativa	根 Root	↓	S.	?	S.	Shenton et al., 2016; Banik et al., 2017 Shi et al., 2018, 2019a
水稻 Oryza sativa	种子 Seed	-	S.	-	S.	Kim et al., 2020
小麦 Triticum aestivum	根 Root	↓	S.	↓	S.	Ofek-Lalzar et al., 2016; Hassani et al., 2020; Özkurt et al., 2020; Tkacz et al., 2020
	种子 Seed	N.S.	S.	N.S.	S.	Özkurt et al., 2020
	叶 Leaf	↓	S.	N.S.	S.	Hassani et al., 2020
大豆 Glycine max	根 Root	↓	S.	?	S.	Liu et al., 2019; Shi et al., 2019a; Chang et al., 2020; Tian et al., 2020a; Zheng et al., 2020
甜菜 Beta vulgaris	根 Root	↓	S.	-	-	Zachow et al., 2014
向日葵 Helianthus annuus	根 Root	N.S.	N.S.	N.S.	S.	Leff et al., 2017
小米 Setaria italica	根 Root	N.S.	S.	-	-	Chaluvadi & Bennetzen, 2018
菜豆 Phaseolus vulgaris	根 Root	↑	S.	-	-	Pérez-Jaramillo et al., 2018, 2019
Agave tequilana	根 Root	↓	S.	?	S.	Coleman-Derr et al., 2016
Agave tequilana	叶 Leaf	↓	S.	?	S.	Coleman-Derr et al., 2016
面包树 Artocarpus communis	根 Root	-	-	↓	S.	Xing et al., 2012