驯化对作物微生物组多样性和群落结构的影响及作用途径

doi:10.17521/cjpe.2021.0059

植物生态学报 ›› 2022, Vol. 46 ›› Issue (3): 249-266.DOI: 10.17521/cjpe.2021.0059

• 综述 • 下一篇

驯化对作物微生物组多样性和群落结构的影响及作用途径

谢育杭^1,*, 贾璞^1,*, 郑修坛¹, 李金天¹, 束文圣¹, 王宇涛¹^,²^,^**()

¹广东省植物发育生物工程重点实验室, 华南师范大学生命科学学院, 广州 510631
²广东省连州市东篱种养实业有限公司, 广东连州 513400

收稿日期:2021-02-22 接受日期:2021-08-02 出版日期:2022-03-20 发布日期:2021-08-27
通讯作者: 王宇涛
作者简介:** (wangyutao@scnu.edu.cn)
第一联系人：
* 同等贡献
基金资助:
国家自然科学基金(31772397);国家自然科学基金(31400365);广东省“扬帆计划”引进创新创业团队专项(2015YT02H032)

Impacts and action pathways of domestication on diversity and community structure of crop microbiome: a review

XIE Yu-Hang^1,*, JIA Pu^1,*, ZHENG Xiu-Tan¹, LI Jin-Tian¹, SHU Wen-Sheng¹, WANG Yu-Tao¹^,²^,^**()

¹Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Science, South China Normal University, Guangzhou 510631, China
²Dongli Planting and Farming Industrial Co., LTD, Lianzhou, Guangdong 513400, China

Received:2021-02-22 Accepted:2021-08-02 Online:2022-03-20 Published:2021-08-27
Contact: WANG Yu-Tao
About author:First author contact:
* Contributed equally to this work
Supported by:
National Natural Science Foundation of China(31772397);National Natural Science Foundation of China(31400365);Guangdong “Yangfan” Innovative and Entepreneurial Research Team Project(2015YT02H032)

摘要/Abstract

摘要：

植物与共存微生物的相互作用对植物的生长、发育、健康等具有重大影响。人类驯化导致现代作物品种与其野生祖先在生理遗传特性、生长环境等方面存在明显差异, 这必然会影响作物与其微生物组的相互作用。理解驯化对作物微生物组的影响及其作用机理, 是充分应用微生物组进行作物改良或人工育种的重要理论基础。结合课题组前期研究基础, 该文综述了驯化对作物地下和地上部分细菌和真菌(尤其是益生菌和病原菌)群落组成和多样性影响的研究现状; 并结合驯化对作物植株形态、根系构型、根系分泌物等生理特征以及生长环境的影响, 分析了驯化塑造作物微生物组的作用途径, 提出了该领域值得重点关注的研究和发展方向。

关键词: 驯化, 微生物组, 作物, 多样性, 群落结构, 细菌, 真菌

Abstract:

Interactions between plants and coexisting microorganisms have significant impacts on plant growth, development, and health. Human domestication has resulted in significant differences between modern crops and their wild ancestors in physiological and genetic characteristics and growth environment, which will inevitably affect the interaction between crops and their microbiomes. Understanding the impact of domestication on the diversity and community structure of microbiome and the mechanisms involved is an important theoretical basis for application of microbiome during crop improvement and breeding. In this review, we summarize the research progress of the effects of domestication on the community composition and diversity of root and shoot microbiome (bacteria and fungi) in crops. We also analyze the involved action pathways in shaping crop microbiomes by domestication, considering the domestication effect on crop morphology, root configuration, exudates and other physiological characteristics, and the change in growth environment. The research directions that need to be focused on in this field were proposed.

Key words: domestication, microbiome, crop, diversity, community structure, bacteria, fungi

谢育杭, 贾璞, 郑修坛, 李金天, 束文圣, 王宇涛. 驯化对作物微生物组多样性和群落结构的影响及作用途径. 植物生态学报, 2022, 46(3): 249-266. DOI: 10.17521/cjpe.2021.0059

XIE Yu-Hang, JIA Pu, ZHENG Xiu-Tan, LI Jin-Tian, SHU Wen-Sheng, WANG Yu-Tao. Impacts and action pathways of domestication on diversity and community structure of crop microbiome: a review. Chinese Journal of Plant Ecology, 2022, 46(3): 249-266. DOI: 10.17521/cjpe.2021.0059

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作物 Crop	部位 Tissue	细菌 Bacteria		真菌 Fungi		参考文献 Reference
作物 Crop	部位 Tissue	多样性 Diversity	群落结构 Community structure	多样性 Diversity	群落结构 Community structure	参考文献 Reference
玉米 Zea mays	根 Root	↓	S.	↓	S.	Sangabriel-Conde et al., 2015; Szoboszlay et al., 2015; Schmidt et al., 2020
玉米 Zea mays	种子 Seed	N.S.	S.	-	-	Johnston-Monje & Raizada, 2011
水稻 Oryza sativa	根 Root	↓	S.	?	S.	Shenton et al., 2016; Banik et al., 2017 Shi et al., 2018, 2019a
水稻 Oryza sativa	种子 Seed	-	S.	-	S.	Kim et al., 2020
小麦 Triticum aestivum	根 Root	↓	S.	↓	S.	Ofek-Lalzar et al., 2016; Hassani et al., 2020; Özkurt et al., 2020; Tkacz et al., 2020
	种子 Seed	N.S.	S.	N.S.	S.	Özkurt et al., 2020
	叶 Leaf	↓	S.	N.S.	S.	Hassani et al., 2020
大豆 Glycine max	根 Root	↓	S.	?	S.	Liu et al., 2019; Shi et al., 2019a; Chang et al., 2020; Tian et al., 2020a; Zheng et al., 2020
甜菜 Beta vulgaris	根 Root	↓	S.	-	-	Zachow et al., 2014
向日葵 Helianthus annuus	根 Root	N.S.	N.S.	N.S.	S.	Leff et al., 2017
小米 Setaria italica	根 Root	N.S.	S.	-	-	Chaluvadi & Bennetzen, 2018
菜豆 Phaseolus vulgaris	根 Root	↑	S.	-	-	Pérez-Jaramillo et al., 2018, 2019
Agave tequilana	根 Root	↓	S.	?	S.	Coleman-Derr et al., 2016
Agave tequilana	叶 Leaf	↓	S.	?	S.	Coleman-Derr et al., 2016
面包树 Artocarpus communis	根 Root	-	-	↓	S.	Xing et al., 2012

作物 Crop	部位 Tissue	细菌 Bacteria		真菌 Fungi		参考文献 Reference
作物 Crop	部位 Tissue	多样性 Diversity	群落结构 Community structure	多样性 Diversity	群落结构 Community structure	参考文献 Reference
玉米 Zea mays	根 Root	↓	S.	↓	S.	Sangabriel-Conde et al., 2015; Szoboszlay et al., 2015; Schmidt et al., 2020
玉米 Zea mays	种子 Seed	N.S.	S.	-	-	Johnston-Monje & Raizada, 2011
水稻 Oryza sativa	根 Root	↓	S.	?	S.	Shenton et al., 2016; Banik et al., 2017 Shi et al., 2018, 2019a
水稻 Oryza sativa	种子 Seed	-	S.	-	S.	Kim et al., 2020
小麦 Triticum aestivum	根 Root	↓	S.	↓	S.	Ofek-Lalzar et al., 2016; Hassani et al., 2020; Özkurt et al., 2020; Tkacz et al., 2020
	种子 Seed	N.S.	S.	N.S.	S.	Özkurt et al., 2020
	叶 Leaf	↓	S.	N.S.	S.	Hassani et al., 2020
大豆 Glycine max	根 Root	↓	S.	?	S.	Liu et al., 2019; Shi et al., 2019a; Chang et al., 2020; Tian et al., 2020a; Zheng et al., 2020
甜菜 Beta vulgaris	根 Root	↓	S.	-	-	Zachow et al., 2014
向日葵 Helianthus annuus	根 Root	N.S.	N.S.	N.S.	S.	Leff et al., 2017
小米 Setaria italica	根 Root	N.S.	S.	-	-	Chaluvadi & Bennetzen, 2018
菜豆 Phaseolus vulgaris	根 Root	↑	S.	-	-	Pérez-Jaramillo et al., 2018, 2019
Agave tequilana	根 Root	↓	S.	?	S.	Coleman-Derr et al., 2016
Agave tequilana	叶 Leaf	↓	S.	?	S.	Coleman-Derr et al., 2016
面包树 Artocarpus communis	根 Root	-	-	↓	S.	Xing et al., 2012

驯化对作物微生物组多样性和群落结构的影响及作用途径

Impacts and action pathways of domestication on diversity and community structure of crop microbiome: a review

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