Chin J Plant Ecol ›› 2005, Vol. 29 ›› Issue (3): 422-428.DOI: 10.17521/cjpe.2005.0056
• Original article • Previous Articles Next Articles
SONG Cong-Wen1,2(), BAO Man-Zhu1
Received:
2004-05-09
Accepted:
2004-09-01
Online:
2005-05-09
Published:
2005-05-30
SONG Cong-Wen, BAO Man-Zhu. SAMPLING STRATEGY FOR PRESERVATION OF GERM PLASM FROM DAVIDIA INVOLUCRATA[J]. Chin J Plant Ecol, 2005, 29(3): 422-428.
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URL: https://www.plant-ecology.com/EN/10.17521/cjpe.2005.0056
引物 | 引物序列 (5′-3′) | 总带数 | 引物 | 引物序列 (5′-3′) | 总带数 |
---|---|---|---|---|---|
Primer | Sequence (5′-3′) | Total bands | Primer | Sequence (5′-3′) | Total bands |
OPA03 | AGTCAGCCAC | 12 | OPB05 | TGCTCCCTTC | 12 |
OPA11 | CAATCGCCGT | 7 | OPB06 | TGCTCTGCCC | 11 |
OPA13 | CAGCACCCAC | 7 | OPB11 | GTAGACCCGT | 7 |
OPB01 | GTTTCGCTCC | 4 | OPB17 | AGGGAACGAG | 8 |
OPB03 | CATCCCCCTG | 7 | OPB18 | CCACAGCAGT | 12 |
OPB04 | GGACTGGAGT | 11 | Total | 11 | 98 |
Table 1 Sequence and number of total amplification bands in Davidia involucrata by 11 random primers
引物 | 引物序列 (5′-3′) | 总带数 | 引物 | 引物序列 (5′-3′) | 总带数 |
---|---|---|---|---|---|
Primer | Sequence (5′-3′) | Total bands | Primer | Sequence (5′-3′) | Total bands |
OPA03 | AGTCAGCCAC | 12 | OPB05 | TGCTCCCTTC | 12 |
OPA11 | CAATCGCCGT | 7 | OPB06 | TGCTCTGCCC | 11 |
OPA13 | CAGCACCCAC | 7 | OPB11 | GTAGACCCGT | 7 |
OPB01 | GTTTCGCTCC | 4 | OPB17 | AGGGAACGAG | 8 |
OPB03 | CATCCCCCTG | 7 | OPB18 | CCACAGCAGT | 12 |
OPB04 | GGACTGGAGT | 11 | Total | 11 | 98 |
地理种群 Geographic population | 多态百分率 Proportion of polymorphic loci (%) | Nei's基因多样度 Nei's gene diversity |
---|---|---|
湖北宣恩 Xuanen, Hubei (XE) | 64.36 | 0.198 9 |
四川峨眉山 Emeishan, Sichuan (EMS) | 85.15 | 0.260 0 |
贵州梵净山 Fanjingshan, Guzhou (FJS) | 80.20 | 0.279 5 |
湖北神农架 Shennongjia, Hubei (SNJ) | 79.21 | 0.277 4 |
甘肃文县 Wenxian, Gansu (WX) | 70.30 | 0.222 3 |
平均 Average | 75.84 | 0.247 6 |
Table 2 Proportion of polymorphic loci and Nei's gene diversity of 5 populations in Davidia involucrata
地理种群 Geographic population | 多态百分率 Proportion of polymorphic loci (%) | Nei's基因多样度 Nei's gene diversity |
---|---|---|
湖北宣恩 Xuanen, Hubei (XE) | 64.36 | 0.198 9 |
四川峨眉山 Emeishan, Sichuan (EMS) | 85.15 | 0.260 0 |
贵州梵净山 Fanjingshan, Guzhou (FJS) | 80.20 | 0.279 5 |
湖北神农架 Shennongjia, Hubei (SNJ) | 79.21 | 0.277 4 |
甘肃文县 Wenxian, Gansu (WX) | 70.30 | 0.222 3 |
平均 Average | 75.84 | 0.247 6 |
树种 Species | 总的种群基因 多样性 (HT) Total gene diversity | 种群内基因 多样性 (Hs) Gene diversity | 种群间基因多样性 (Dst) Gene diversity within populations | 基因分化系数 (Gst) Gene differentiation between populations | 基因流 (Nm) Estimata of gene flow from Gst |
---|---|---|---|---|---|
珙桐 Davidia involucrata | 0.334 5 | 0.247 6 | 0.086 9 | 0.259 9 | 1.423 9 |
马褂木 Liriodendron chinense1) | 0.391 1 | 0.256 8 | 0.134 3 | 0.343 4 |
Table 3 Coefficient of genetic differentiation for geographic populations of Davindia involucrata
树种 Species | 总的种群基因 多样性 (HT) Total gene diversity | 种群内基因 多样性 (Hs) Gene diversity | 种群间基因多样性 (Dst) Gene diversity within populations | 基因分化系数 (Gst) Gene differentiation between populations | 基因流 (Nm) Estimata of gene flow from Gst |
---|---|---|---|---|---|
珙桐 Davidia involucrata | 0.334 5 | 0.247 6 | 0.086 9 | 0.259 9 | 1.423 9 |
马褂木 Liriodendron chinense1) | 0.391 1 | 0.256 8 | 0.134 3 | 0.343 4 |
地理种群Population | 1 | 2 | 3 | 4 | 5 |
---|---|---|---|---|---|
湖北宣恩 Xuanen, Hubei (XE) | 0.863 7 | 0.878 1 | 0.887 8 | 0.814 1 | |
四川峨眉山 Emeishan, Sichuan (EMS) | 0.146 6 | 0.858 0 | 0.845 8 | 0.857 7 | |
贵州梵净山 Fanjingshan, Guzhou (FJS) | 0.129 9 | 0.153 1 | 0.932 1 | 0.828 5 | |
湖北神农架 Shennongjia, Hubei (SNJ) | 0.119 0 | 0.167 5 | 0.070 3 | 0.838 2 | |
甘肃文县 Wenxian, Gansu (WX) | 0.205 7 | 0.153 5 | 0.188 1 | 0.176 4 |
Table 4 Nei's genetic identity (above diagonal) and genetic distance of five populations in Davidia involucrata
地理种群Population | 1 | 2 | 3 | 4 | 5 |
---|---|---|---|---|---|
湖北宣恩 Xuanen, Hubei (XE) | 0.863 7 | 0.878 1 | 0.887 8 | 0.814 1 | |
四川峨眉山 Emeishan, Sichuan (EMS) | 0.146 6 | 0.858 0 | 0.845 8 | 0.857 7 | |
贵州梵净山 Fanjingshan, Guzhou (FJS) | 0.129 9 | 0.153 1 | 0.932 1 | 0.828 5 | |
湖北神农架 Shennongjia, Hubei (SNJ) | 0.119 0 | 0.167 5 | 0.070 3 | 0.838 2 | |
甘肃文县 Wenxian, Gansu (WX) | 0.205 7 | 0.153 5 | 0.188 1 | 0.176 4 |
Fig.6 The value of effective number of alleles (Ne) obtained by the different number of samples individuals (10×10, 20×10, 30×10) The horizontal line is based on all the Davidia involucrata individuals and each dot is generated from each sampling, the same below
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