土壤微生物固碳机理及其影响因素研究进展

doi:10.17521/cjpe.2023.0379

植物生态学报 ›› 2024, Vol. 48 ›› Issue (11): 1406-1421.DOI: 10.17521/cjpe.2023.0379 cstr: 32100.14.cjpe.2023.0379

土壤微生物固碳机理及其影响因素研究进展

郭强¹, 韩子琛¹, 夏允¹, 杨柳明¹^,²^,³, 范跃新¹^,²^,³^,^*()(), 杨玉盛¹^,²^,³

¹福建师范大学地理科学学院、碳中和未来技术学院, 福州 350007
²福建师范大学湿润亚热带生态-地理过程教育部重点实验室, 福建省植物生理生态重点实验室, 福州 350007
³福建师范大学地理研究所, 福州 350007

收稿日期:2023-12-14 接受日期:2024-07-05 出版日期:2024-11-20 发布日期:2024-07-16
通讯作者: ORCID: *范跃新: 0000-0001-8881-1956(yxfan@fjnu.edu.cn)
基金资助:
国家自然科学基金(32192433);国家自然科学基金(32371674);国家自然科学基金(32171587)

Study advances on the mechanism of soil microbial carbon fixation and associated influencing factors

GUO Qiang¹, HAN Zi-Chen¹, XIA Yun¹, YANG Liu-Ming¹^,²^,³, FAN Yue-Xin¹^,²^,³^,^*()(), YANG Yu-Sheng¹^,²^,³

¹School of Geographical Sciences, School of Carbon Neutrality Future Technology, Fujian Normal University, Fuzhou 350007, China
²Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, Fujian Provincial Key Laboratory for Plant Eco-physiology, Fujian Normal University, Fuzhou 350007, China
³Institute of Geography, Fujian Normal University, Fuzhou 350007, China

Received:2023-12-14 Accepted:2024-07-05 Online:2024-11-20 Published:2024-07-16
Contact: *FAN Yue-Xin (yxfan@fjnu.edu.cn)
Supported by:
National Natural Science Foundation of China(32192433);National Natural Science Foundation of China(32371674);National Natural Science Foundation of China(32171587)

摘要/Abstract

摘要：

土壤微生物是陆地生态系统碳循环的主要驱动者, 不仅通过促进有机碳分解向大气释放CO₂, 还会通过微生物固碳作用固定大气CO₂。微生物固碳途径普遍存在于多种生态系统, 对全球碳循环具有重要意义。该文通过收集和梳理相关文献, 从3个方面综述了土壤微生物固碳的机理和影响因素: 1)土壤自养微生物固碳途径; 2)土壤异养微生物固碳机理; 3)土壤属性、生态系统类型和气候变化(增温、降水变化)等对土壤微生物固碳速率和潜力的影响。该文有助于提升对土壤微生物固碳机理的理解和认识, 从微生物固碳角度为陆地生态系统碳库动态以及土壤碳汇的不确定性提供解释, 也为完善未来气候变化下陆地碳循环模型提供理论依据。

关键词: 自养微生物固碳, 异养微生物固碳, 固碳途径, 碳循环, 气候变化

Abstract:

Soil microorganisms are key drivers of carbon (C) cycling in terrestrial ecosystems not only by facilitating soil organic C decomposition and CO₂ emission, but sequestering atmospheric CO₂ into soil organic C through microbial C fixation. Due to the ubiquitous presence of microorganisms in soils, microbial C fixation is vital for terrestrial ecosystem C cycle globally. In this paper, we explored the mechanisms and determinants of soil microbial C fixation based on data collections and analyses to address the following the three issues: 1) the pathways and processes of autotrophic microbial C fixation in soil; 2) the pathways and processes of heterotrophic microbial C fixation in soil; and 3) the impacts of soil properties, ecosystem types, and climate change (i.e., warming and precipitation change) on microbial C fixation. Overall, the paper provides insights into the dynamics of C fixation in terrestrial ecosystems which is helpful for better understanding the uncertainty of soil C pool in the relationship to microbial C fixation, and which also lays a theoretical foundation for advancing of C cycling models under climate change.

Key words: autotrophic microbial carbon fixation, heterotrophic microbial carbon fixation, carbon fixation pathway, carbon cycle, climate change

郭强, 韩子琛, 夏允, 杨柳明, 范跃新, 杨玉盛. 土壤微生物固碳机理及其影响因素研究进展. 植物生态学报, 2024, 48(11): 1406-1421. DOI: 10.17521/cjpe.2023.0379

GUO Qiang, HAN Zi-Chen, XIA Yun, YANG Liu-Ming, FAN Yue-Xin, YANG Yu-Sheng. Study advances on the mechanism of soil microbial carbon fixation and associated influencing factors. Chinese Journal of Plant Ecology, 2024, 48(11): 1406-1421. DOI: 10.17521/cjpe.2023.0379

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链接本文: https://www.plant-ecology.com/CN/10.17521/cjpe.2023.0379

https://www.plant-ecology.com/CN/Y2024/V48/I11/1406

图/表 3

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途径 Pathway	能量来源 Energy source	微生物类群 Microbial community	环境 Environment	关键酶 Key enzyme	参考文献 Reference
卡尔文循环 Calvin-Benson-Bassham Cycle	光能 Solar	变形菌门、聚球藻属、原绿球藻属等 Proteobacteria, Synechococcus, Prochlorococcus et al.	好氧 Aerobic	核酮糖1,5-双磷酸羧化酶/加氧酶和磷酸核酮糖激酶 Rubisco and Ribulose phosphate kinase	Paul et al., 2000; Bar-Even et al., 2010
还原性乙酰辅酶A循环 Reductive Acetyl-CoA Cycle	氢气 Hydrogen	杨氏梭菌、产乙酸菌、产甲烷菌等 Clostridiumljungdahlii, Homoacetogen, Methanogenus et al.	厌氧 Anaerobic	乙酰辅酶A合成酶-CO脱氢酶 Acetyl coenzyme A synthetase and CO dehydrogenase enzyme	Ragsdale, 1997; Beulig et al., 2016
还原性三羧酸循环 Reductive Tricarboxylic Acid Cycle	光能、单质硫 Solar, sulfur	泥生绿菌、绿色硫黄细菌等 Chlorobiumlimicola, Chlorobiumthiosulfatophilumy et al.	厌氧 Anaerobic	2 -酮戊二酸合成酶和ATP -柠檬酸裂解酶 2-Ketoglutarate synthase, ATP-citrate lyase	Evans et al., 1966; Ivanovsky et al., 1980; Bar-Even et al., 2010
3-羟基丙酸循环 3-hydroxypropionate Cycle	光能 Solar	绿弯菌门等 Chloroflexaceae et al.	好氧 Aerobic	丙二酰辅酶A还原酶、丙二酰辅酶A合成酶和丙二酰辅酶A裂解酶 Malonyl-coenzyme A reductase, Malonyl- coenzyme A synthetase, Malonyl coenzyme A lyase	Strauss & Fuchs, 1993; Herter et al., 2001; Bar-Even et al., 2010
3-羟基丙酸/4-羟基丁酸循环 3-hydroxypropionate/4-hydroxybutyrate Cycle	氢气、单质硫 Hydrogen, sulfur	嗜泉古菌门、金属球菌、硫叶菌属、古球菌属等 Crenarchaeota, Metallosphaeraseduia, Sulfolobus, Archaeoglobus et al.	好氧 Aerobic	乙酰辅酶A丙酰辅酶A羧化酶、甲基丙二酰辅酶A变位酶和4 -羟基丁酰辅酶A脱水酶 Acetyl coenzyme A propionyl coenzyme A carboxylase, Methylmalonyl-coenzyme A transferase, 4-Hydroxybutyryl-coenzyme A dehydratase	Berg et al., 2007; Huber et al., 2008; Bar-Even et al., 2010
二羧酸/4-羟基丁酸循环 Dicarboxylate/4- hydroxybutyrate Cycle	氢气、单质硫 Hydrogen, sulfur	嗜泉古菌、热变形菌目、除硫球菌目等 Crenarchaeal, Thermoproteales, Desulfurococcales et al.	厌氧 Anaerobic	4-羟基丁酰基辅酶A脱水酶 4-Hydroxybutyryl coenzyme A dehydrogenase	Bar-Even et al., 2010; Berg et al., 2010b

途径 Pathway	能量来源 Energy source	微生物类群 Microbial community	环境 Environment	关键酶 Key enzyme	参考文献 Reference
卡尔文循环 Calvin-Benson-Bassham Cycle	光能 Solar	变形菌门、聚球藻属、原绿球藻属等 Proteobacteria, Synechococcus, Prochlorococcus et al.	好氧 Aerobic	核酮糖1,5-双磷酸羧化酶/加氧酶和磷酸核酮糖激酶 Rubisco and Ribulose phosphate kinase	Paul et al., 2000; Bar-Even et al., 2010
还原性乙酰辅酶A循环 Reductive Acetyl-CoA Cycle	氢气 Hydrogen	杨氏梭菌、产乙酸菌、产甲烷菌等 Clostridiumljungdahlii, Homoacetogen, Methanogenus et al.	厌氧 Anaerobic	乙酰辅酶A合成酶-CO脱氢酶 Acetyl coenzyme A synthetase and CO dehydrogenase enzyme	Ragsdale, 1997; Beulig et al., 2016
还原性三羧酸循环 Reductive Tricarboxylic Acid Cycle	光能、单质硫 Solar, sulfur	泥生绿菌、绿色硫黄细菌等 Chlorobiumlimicola, Chlorobiumthiosulfatophilumy et al.	厌氧 Anaerobic	2 -酮戊二酸合成酶和ATP -柠檬酸裂解酶 2-Ketoglutarate synthase, ATP-citrate lyase	Evans et al., 1966; Ivanovsky et al., 1980; Bar-Even et al., 2010
3-羟基丙酸循环 3-hydroxypropionate Cycle	光能 Solar	绿弯菌门等 Chloroflexaceae et al.	好氧 Aerobic	丙二酰辅酶A还原酶、丙二酰辅酶A合成酶和丙二酰辅酶A裂解酶 Malonyl-coenzyme A reductase, Malonyl- coenzyme A synthetase, Malonyl coenzyme A lyase	Strauss & Fuchs, 1993; Herter et al., 2001; Bar-Even et al., 2010
3-羟基丙酸/4-羟基丁酸循环 3-hydroxypropionate/4-hydroxybutyrate Cycle	氢气、单质硫 Hydrogen, sulfur	嗜泉古菌门、金属球菌、硫叶菌属、古球菌属等 Crenarchaeota, Metallosphaeraseduia, Sulfolobus, Archaeoglobus et al.	好氧 Aerobic	乙酰辅酶A丙酰辅酶A羧化酶、甲基丙二酰辅酶A变位酶和4 -羟基丁酰辅酶A脱水酶 Acetyl coenzyme A propionyl coenzyme A carboxylase, Methylmalonyl-coenzyme A transferase, 4-Hydroxybutyryl-coenzyme A dehydratase	Berg et al., 2007; Huber et al., 2008; Bar-Even et al., 2010
二羧酸/4-羟基丁酸循环 Dicarboxylate/4- hydroxybutyrate Cycle	氢气、单质硫 Hydrogen, sulfur	嗜泉古菌、热变形菌目、除硫球菌目等 Crenarchaeal, Thermoproteales, Desulfurococcales et al.	厌氧 Anaerobic	4-羟基丁酰基辅酶A脱水酶 4-Hydroxybutyryl coenzyme A dehydrogenase	Bar-Even et al., 2010; Berg et al., 2010b

土壤微生物固碳机理及其影响因素研究进展

Study advances on the mechanism of soil microbial carbon fixation and associated influencing factors

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